| East Bay | Washington, NY | 39.4 miles | SW |
| Wood Creek | Washington, NY | 41.2 miles | SW |
| Wood Creek | Washington, NY | 42 miles | SW |
| Dead Creek | Clinton, NY | 71 miles | NW |
| The Gut | Grand Isle, VT | 79.1 miles | NW |
| Kelly Slough | Franklin, NY | 89.2 miles | NW |
| Big Marsh Slough | Franklin, VT | 90 miles | NW |
| Fish Creek | Franklin, NY | 96 miles | NW |
| Blind Creek | Rockingham, NH | 106 miles | SE |
| Swains Creek | Rockingham, NH | 106.3 miles | SE |
| Eastman Slough | Rockingham, NH | 106.6 miles | SE |
| Plum Island River | Essex, MA | 113.1 miles | SE |
| Annisquam River | Essex, MA | 123.2 miles | SE |
| Inner Gut | Essex, MA | 123.5 miles | SE |
| Outer Gut | Essex, MA | 123.6 miles | SE |
| Western Way | Suffolk, MA | 127.4 miles | SE |
| Black Rock Channel | Plymouth, MA | 129.2 miles | SE |
| Hull Gut | Plymouth, MA | 130.5 miles | SE |
| West Gut | Norfolk, MA | 130.7 miles | SE |
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